{ "_id": "6a1f29fab401979e734242e9", "Package": "paleotree", "Type": "Package", "Version": "3.4.7", "Title": "Paleontological and Phylogenetic Analyses of Evolution", "Date": "2024-07-06", "Author": "David W. Bapst, Peter J. Wagner", "Language": "en-US", "ByteCompile": "TRUE", "Encoding": "UTF-8", "Maintainer": "David W. Bapst ", "BugReports": "https://github.com/dwbapst/paleotree/issues", "Description": "Provides tools for transforming, a posteriori\ntime-scaling, and modifying phylogenies containing extinct\n(i.e. fossil) lineages. In particular, most users are\ninterested in the functions timePaleoPhy, bin_timePaleoPhy,\ncal3TimePaleoPhy and bin_cal3TimePaleoPhy, which date\ncladograms of fossil taxa using stratigraphic data. This\npackage also contains a large number of likelihood functions\nfor estimating sampling and diversification rates from\ndifferent types of data available from the fossil record (e.g.\nrange data, occurrence data, etc). paleotree users can also\nsimulate diversification and sampling in the fossil record\nusing the function simFossilRecord, which is a detailed\nsimulator for branching birth-death-sampling processes composed\nof discrete taxonomic units arranged in ancestor-descendant\nrelationships. Users can use simFossilRecord to simulate\ndiversification in incompletely sampled fossil records, under\nvarious models of morphological differentiation (i.e. the\nvarious patterns by which morphotaxa originate from one\nanother), and with time-dependent, longevity-dependent and/or\ndiversity-dependent rates of diversification, extinction and\nsampling. Additional functions allow users to translate\nsimulated ancestor-descendant data from simFossilRecord into\nstandard time-scaled phylogenies or unscaled cladograms that\nreflect the relationships among taxon units.", "License": "CC0", "URL": "https://github.com/dwbapst/paleotree", "RoxygenNote": "7.3.2", "Config/pak/sysreqs": "libglpk-dev make libpng-dev libxml2-dev", "Repository": "https://phylotastic.r-universe.dev", "Date/Publication": "2024-07-09 05:08:05 UTC", "RemoteUrl": "https://github.com/dwbapst/paleotree", "RemoteRef": "HEAD", "RemoteSha": "72ad91ba4ce2aa5edd07624291c1abc9df305e5c", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-02 19:02:18 UTC", "User": "root" }, "MD5sum": "5ddeec02c6546b0d8eb1dcdad1330c6a", "_user": "phylotastic", "_type": "src", "_file": "paleotree_3.4.7.tar.gz", "_fileid": "ea3ceeda1851a1d034ea5be34588f809c3271440721a3ea5f36c041edb6f7513", "_filesize": 1919791, "_sha256": "ea3ceeda1851a1d034ea5be34588f809c3271440721a3ea5f36c041edb6f7513", "_created": "2026-06-02T19:02:18.000Z", "_published": "2026-06-02T19:07:38.761Z", "_distro": "noble", "_jobs": [ { "job": 79150230006, "time": 269, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7367309938" }, { "job": 79150229937, "time": 247, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7367302237" }, { "job": 79150229966, "time": 149, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7367302819" }, { "job": 79150229873, "time": 136, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7367304544" }, { "job": 79149593277, "time": 199, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7367211254" }, { "job": 79150229875, "time": 112, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7367252355" }, { "job": 79150229874, "time": 218, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7367291307" }, { "job": 79150229930, "time": 256, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7367306371" }, { "job": 79150229949, "time": 237, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7367298235" } ], "_buildurl": "https://github.com/r-universe/phylotastic/actions/runs/26841500540", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/dwbapst/paleotree", "_commit": { "id": "72ad91ba4ce2aa5edd07624291c1abc9df305e5c", "author": "David Bapst ", "committer": "GitHub ", "message": "Merge pull request #42 from dwbapst/developmentBranch\n\nPull to fix R CHECK Github Actions Badge in README", "time": 1720501685 }, "_maintainer": { "name": "David W. 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