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the skulls of 21 Vulpes vulpes specimens before Procrustes analysis", "topics": [ "V.arr.unal" ] }, { "page": "V.mat.unal", "title": "29 3D landmarks from the skulls of 19 carnivoran specimens before Procrustes analysis", "topics": [ "V.mat.unal" ] }, { "page": "V.PS.nov1", "title": "Object of class array output by Morpho after PA", "topics": [ "V.PS.nov1" ] }, { "page": "var.foxes", "title": "Vector with the population variance of Vulpes vulpes", "topics": [ "var.foxes" ] }, { "page": "vulpes21x29.raw", "title": "29 3D landmarks from the skulls of 21 Vulpes vulpes specimens", "topics": [ "vulpes21x29.raw" ] }, { "page": "write.morpho", "title": "Generate a file with a morphological alignment for MCMCtree", "topics": [ "write.morpho" ] } ], "_readme": "https://github.com/dosreislab/mcmc3r/raw/HEAD/README.md", "_rundeps": [ "ape", "coda", "corpcor", "digest", "lattice", "nlme", "Rcpp" ], "_vignettes": [ { "source": "Reproduce_Carnivora_analysis.Rmd", "filename": "Reproduce_Carnivora_analysis.html", "title": "Total-evidence dating of carnivores integrating molecular and morphometric data", "author": "Sandra Álvarez-Carretero and Mario dos Reis", "engine": "knitr::rmarkdown", "headings": [ "1. Collect and process morphological data", "Specimens information", "Landmark points", "Raw data", "A. Carnivores data set", "B. Foxes data set", "2. Procrustes alignment", "3. Correct C for population noise and trait correlation", "4. Bayesian inference of divergence times with MCMCtree", "5. 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