{
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  "Title": "EcoPhyloMapper",
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  "Description": "Facilitates the aggregation of species' geographic ranges\nfrom vector or raster spatial data, and that enables the\ncalculation of various morphological and phylogenetic community\nmetrics across geography. Citation: Title, PO, DL Swiderski and\nML Zelditch (2022) <doi:10.1111/2041-210X.13914>.",
  "License": "GPL (>= 3)",
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  "BugReports": "https://github.com/ptitle/epm/issues",
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  "Repository": "https://phylotastic.r-universe.dev",
  "Date/Publication": "2025-08-20 18:24:49 UTC",
  "RemoteUrl": "https://github.com/ptitle/epm",
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  "Author": "Pascal Title [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6316-0736>),\nDonald Swiderski [aut],\nMiriam Zelditch [aut]",
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    "author": "Pascal Title <pascaltitle@gmail.com>",
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    "message": "two changes: search for empty geometries, and allow for single-species epmGrid objects\n",
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    "name": "phylotastic",
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  "_topics": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/epm.html",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md"
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  "_realowner": "ptitle",
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  "_releases": [
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      "date": "2022-05-17"
    },
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      "version": "1.0.1",
      "date": "2022-05-19"
    },
    {
      "version": "1.0.2",
      "date": "2022-06-22"
    },
    {
      "version": "1.1.0",
      "date": "2022-08-08"
    },
    {
      "version": "1.1.1",
      "date": "2023-03-03"
    },
    {
      "version": "1.1.2",
      "date": "2023-12-19"
    },
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      "version": "1.1.3",
      "date": "2024-09-13"
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      "version": "1.1.4",
      "date": "2025-02-14"
    },
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      "version": "1.1.5",
      "date": "2025-07-03"
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      "date": "2025-08-20"
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    "addLegend",
    "addPhylo",
    "addTraits",
    "betadiv_disparity",
    "betadiv_phylogenetic",
    "betadiv_taxonomic",
    "calcMeanShape",
    "coordsFromEpmGrid",
    "createEPMgrid",
    "customBetaDiv",
    "customGridMetric",
    "dropSpecies",
    "DRstat",
    "epmToPhyloComm",
    "expandSpeciesCellList",
    "extractFromEpmGrid",
    "faithPD",
    "generateOccurrenceMatrix",
    "getExtentOfList",
    "getMultiMapRamp",
    "getSpPartialDisparities",
    "gridMetrics",
    "identify.epmGrid",
    "interactiveExtent",
    "plot.epmGrid",
    "plotDispersionField",
    "plotSpRange",
    "rasterToGrid",
    "read.epmGrid",
    "reduceToCommonTaxa",
    "singleSpCellIndex",
    "spCountIndex",
    "summarizeEpmGridList",
    "tableFromEpmGrid",
    "write.epmGrid",
    "writeEpmSpatial"
  ],
  "_datasets": [
    {
      "name": "tamiasEPM",
      "title": "Eco Phylo Mapper datasets",
      "object": "tamiasEPM",
      "class": [
        "epmGrid"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "tamiasPolyList",
      "title": "Eco Phylo Mapper datasets",
      "object": "tamiasPolyList",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "tamiasTraits",
      "title": "Eco Phylo Mapper datasets",
      "object": "tamiasTraits",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V2",
        "V3",
        "V4",
        "V5",
        "V6",
        "V7",
        "V8",
        "V9",
        "V10",
        "V11",
        "V12",
        "V13",
        "V14",
        "V15",
        "V16",
        "V17",
        "V18",
        "V19",
        "V20",
        "V21",
        "V22",
        "V23",
        "V24",
        "V25",
        "V26",
        "V27",
        "V28",
        "V29",
        "V30",
        "V31",
        "V32",
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        "V34",
        "V35",
        "V36",
        "V37",
        "V38",
        "V39",
        "V40",
        "V41",
        "V42",
        "V43",
        "V44",
        "V45",
        "V46",
        "V47",
        "V48",
        "V49",
        "V50",
        "V51",
        "V52",
        "V53",
        "V54",
        "V55",
        "V56",
        "V57",
        "V58",
        "V59",
        "V60",
        "V61",
        "V62",
        "V63",
        "V64",
        "V65",
        "V66",
        "V67",
        "V68",
        "V69",
        "V70",
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        "V75",
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        "V78",
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        "V80",
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        "V83",
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        "V86",
        "V87",
        "V88",
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        "V90",
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        "V94",
        "V95",
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        "V119",
        "V120",
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        "V122",
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        "V124",
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        "V131",
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        "V135",
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        "V138",
        "V139",
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        "V147",
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        "V154",
        "V155",
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        "V159",
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        "V162",
        "V163",
        "V164",
        "V165",
        "V166",
        "V167",
        "V168",
        "V169",
        "V170",
        "V171",
        "V172",
        "V173",
        "V174",
        "V175",
        "V176",
        "V177",
        "V178",
        "V179",
        "V180",
        "V181",
        "V182",
        "V183",
        "V184",
        "V185",
        "V186",
        "V187",
        "V188",
        "V189",
        "V190",
        "V191",
        "V192",
        "V193",
        "V194",
        "V195",
        "V196",
        "V197"
      ],
      "rows": 28,
      "table": true,
      "tojson": true
    },
    {
      "name": "tamiasTree",
      "title": "Eco Phylo Mapper datasets",
      "object": "tamiasTree",
      "class": [
        "phylo"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "tamiasTreeSet",
      "title": "Eco Phylo Mapper datasets",
      "object": "tamiasTreeSet",
      "class": [
        "multiPhylo"
      ],
      "fields": [],
      "table": true,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "addLegend",
      "title": "addLegend",
      "topics": [
        "addLegend"
      ]
    },
    {
      "page": "addPhylo",
      "title": "addPhylo",
      "topics": [
        "addPhylo"
      ]
    },
    {
      "page": "addTraits",
      "title": "addTraits",
      "topics": [
        "addTraits"
      ]
    },
    {
      "page": "betadiv_disparity",
      "title": "Map change in morphological disparity",
      "topics": [
        "betadiv_disparity"
      ]
    },
    {
      "page": "betadiv_phylogenetic",
      "title": "Map phylogenetic turnover in species communities",
      "topics": [
        "betadiv_phylogenetic"
      ]
    },
    {
      "page": "betadiv_taxonomic",
      "title": "Map turnover in species communities",
      "topics": [
        "betadiv_taxonomic"
      ]
    },
    {
      "page": "calcMeanShape",
      "title": "Calculate mean shape per grid cell",
      "topics": [
        "calcMeanShape"
      ]
    },
    {
      "page": "coordsFromEpmGrid",
      "title": "Retrieve coordinates from epmGrid",
      "topics": [
        "coordsFromEpmGrid"
      ]
    },
    {
      "page": "createEPMgrid",
      "title": "Create epmGrid object",
      "topics": [
        "createEPMgrid"
      ]
    },
    {
      "page": "customBetaDiv",
      "title": "Custom beta diversity metrics",
      "topics": [
        "customBetaDiv"
      ]
    },
    {
      "page": "customGridMetric",
      "title": "Custom grid metrics",
      "topics": [
        "customGridMetric"
      ]
    },
    {
      "page": "dropSpecies",
      "title": "Drop species from epmGrid",
      "topics": [
        "dropSpecies"
      ]
    },
    {
      "page": "DRstat",
      "title": "Calculate the DR statistic",
      "topics": [
        "DRstat"
      ]
    },
    {
      "page": "epm",
      "title": "EcoPhyloMapper (epm)",
      "topics": [
        "epm-package",
        "epm"
      ]
    },
    {
      "page": "epm-example",
      "title": "Eco Phylo Mapper datasets",
      "topics": [
        "epm-example",
        "tamiasEPM",
        "tamiasPolyList",
        "tamiasTraits",
        "tamiasTree",
        "tamiasTreeSet"
      ]
    },
    {
      "page": "epmToPhyloComm",
      "title": "Convert epmGrid to community matrix",
      "topics": [
        "epmToPhyloComm"
      ]
    },
    {
      "page": "expandSpeciesCellList",
      "title": "Expand species list",
      "topics": [
        "expandSpeciesCellList"
      ]
    },
    {
      "page": "extractFromEpmGrid",
      "title": "Extract from epmGrid",
      "topics": [
        "extractFromEpmGrid"
      ]
    },
    {
      "page": "faithPD",
      "title": "Calculate Faith's Phylogenetic Diversity",
      "topics": [
        "faithPD"
      ]
    },
    {
      "page": "generateOccurrenceMatrix",
      "title": "Convert epmGrid to community matrix",
      "topics": [
        "generateOccurrenceMatrix"
      ]
    },
    {
      "page": "getExtentOfList",
      "title": "Get extent of list",
      "topics": [
        "getExtentOfList"
      ]
    },
    {
      "page": "getMultiMapRamp",
      "title": "Extract min and max for multiple epmGrids",
      "topics": [
        "getMultiMapRamp"
      ]
    },
    {
      "page": "getSpPartialDisparities",
      "title": "Partial Disparity",
      "topics": [
        "getSpPartialDisparities"
      ]
    },
    {
      "page": "gridMetrics",
      "title": "Grid Metrics",
      "topics": [
        "gridMetrics"
      ]
    },
    {
      "page": "identify",
      "title": "Interactively identify species in epmGrid",
      "topics": [
        "identify.epmGrid"
      ]
    },
    {
      "page": "interactiveExtent",
      "title": "Interactively choose extent",
      "topics": [
        "interactiveExtent"
      ]
    },
    {
      "page": "plot",
      "title": "Plot epmGrid",
      "topics": [
        "plot.epmGrid"
      ]
    },
    {
      "page": "plotDispersionField",
      "title": "Plot dispersion fields",
      "topics": [
        "plotDispersionField"
      ]
    },
    {
      "page": "plotSpRange",
      "title": "plot a single species' range",
      "topics": [
        "plotSpRange"
      ]
    },
    {
      "page": "rasterToGrid",
      "title": "Convert raster to sf grid",
      "topics": [
        "rasterToGrid"
      ]
    },
    {
      "page": "read.epmGrid",
      "title": "Read a epmGrid object",
      "topics": [
        "read.epmGrid"
      ]
    },
    {
      "page": "reduceToCommonTaxa",
      "title": "Subset epmGrid to shared taxa",
      "topics": [
        "reduceToCommonTaxa"
      ]
    },
    {
      "page": "singleSpCellIndex",
      "title": "Identify single-species cells",
      "topics": [
        "singleSpCellIndex"
      ]
    },
    {
      "page": "spCountIndex",
      "title": "Identify cells that have a certain number of taxa",
      "topics": [
        "spCountIndex"
      ]
    },
    {
      "page": "summarizeEpmGridList",
      "title": "Summarize lists of epmGrid objects",
      "topics": [
        "summarizeEpmGridList"
      ]
    },
    {
      "page": "summary",
      "title": "epmGrid summary",
      "topics": [
        "summary.epmGrid"
      ]
    },
    {
      "page": "tableFromEpmGrid",
      "title": "Data table from epmGrid",
      "topics": [
        "tableFromEpmGrid"
      ]
    },
    {
      "page": "write.epmGrid",
      "title": "Save epmGrid object",
      "topics": [
        "write.epmGrid"
      ]
    },
    {
      "page": "writeEpmSpatial",
      "title": "Write epmGrid Spatial Object to Disk",
      "topics": [
        "writeEpmSpatial"
      ]
    }
  ],
  "_readme": "https://github.com/ptitle/epm/raw/HEAD/README.md",
  "_rundeps": [
    "ape",
    "class",
    "classInt",
    "DBI",
    "digest",
    "e1071",
    "KernSmooth",
    "lattice",
    "nlme",
    "pbapply",
    "proxy",
    "Rcpp",
    "RcppProgress",
    "s2",
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    "terra",
    "units",
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