{ "_id": "6a1f2a93b401979e734249ff", "Package": "dietr", "Version": "1.1.6-1", "Date": "2025-1-23", "Title": "Diet Estimated Trophic Levels", "Authors@R": "person(given = c(\"Samuel\", \"R.\"),\nfamily = \"Borstein\",\nrole = c(\"aut\", \"cre\"),\nemail = \"sam@borstein.com\")", "Description": "Estimates fractional trophic level from quantitative and\nqualitative diet data and calculates electivity indices in R.\nBorstein (2020) .", "License": "GPL (>= 2)", "LazyData": "true", "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "URL": "https://github.com/sborstein/dietr", "BugReports": "https://github.com/sborstein/dietr/issues", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libxml2-dev\nxz-utils", "Repository": "https://phylotastic.r-universe.dev", "Date/Publication": "2025-01-23 18:51:53 UTC", "RemoteUrl": "https://github.com/sborstein/dietr", "RemoteRef": "HEAD", "RemoteSha": "cd521d8d6e25caa1ba1a3baf90e0b9c35ea0b3d2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-15 07:54:33 UTC", "User": "root" }, "Author": "Samuel R. Borstein [aut, cre]", "Maintainer": "Samuel R. Borstein ", "MD5sum": "811bcaa5f49f41b79a800b9621e15296", "_user": "phylotastic", "_type": "src", "_file": "dietr_1.1.6-1.tar.gz", "_fileid": "c584d3efaddf50938913ae7fcd8ba09c38b0306c185ad7d0fcad0acc73ef3bcc", "_filesize": 1178094, "_sha256": "c584d3efaddf50938913ae7fcd8ba09c38b0306c185ad7d0fcad0acc73ef3bcc", "_created": "2026-05-15T07:54:33.000Z", "_published": "2026-06-02T19:10:11.004Z", "_distro": "noble", "_jobs": [ { "job": 79151183342, "time": 140, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7012682106" }, { "job": 79151183414, "time": 128, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7012678298" }, { "job": 79151183661, "time": 77, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7012661419" }, { "job": 79151183333, "time": 98, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7012668627" }, { "job": 79151182617, "time": 183, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7012635340" }, { "job": 79151182637, "time": 110, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7367362872" }, { "job": 79151183332, "time": 89, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7012665496" }, { "job": 79151183966, "time": 68, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7012658562" }, { "job": 79151183458, "time": 73, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7012660255" } ], "_buildurl": "https://github.com/r-universe/phylotastic/actions/runs/25906885572", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/sborstein/dietr", "_commit": { "id": "cd521d8d6e25caa1ba1a3baf90e0b9c35ea0b3d2", "author": "Sam Borstein ", "committer": "Sam Borstein ", "message": "Prep description for bugfix release\n", "time": 1737658313 }, "_maintainer": { "name": "Samuel R. Borstein", "email": "sam@borstein.com", "login": "sborstein", "uuid": 15037889 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.3", "role": "Depends" }, { "package": "rfishbase", "version": ">= 5.0", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "sborstein", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "diet", "electivity", "trophic" ], "_stars": 6, "_contributors": [ { "user": "sborstein", "count": 186, "uuid": 15037889 } ], "_userbio": { "uuid": 1652822, "type": "organization", "name": "phylotastic" }, "_downloads": { "count": 302, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/dietr" }, "_mentions": 1, "_devurl": "https://github.com/sborstein/dietr", "_searchresults": 23, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/dietr.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/sborstein/dietr", "_realowner": "sborstein", "_cranurl": true, "_releases": [ { "version": "1.0", "date": "2019-11-13" }, { "version": "1.1.0", "date": "2020-07-18" }, { "version": "1.1.1", "date": "2021-03-12" }, { "version": "1.1.2", "date": "2021-11-23" }, { "version": "1.1.3", "date": "2021-12-15" }, { "version": "1.1.4", "date": "2023-02-26" }, { "version": "1.1.5-1", "date": "2024-09-16" }, { "version": "1.1.6", "date": "2025-01-13" }, { "version": "1.1.6-1", "date": "2025-01-23" } ], "_exports": [ "CompositeIndices", "ConvertFishbaseDiet", "ConvertFishbaseFood", "DietTroph", "Electivity", "FoodTroph", "GastrosomaticIndex", "PlotElectivity", "VacuityIndex" ], "_datasets": [ { "name": "Casaux1998", "title": "Casaux1998", "object": "Casaux1998", "class": [ "data.frame" ], "fields": [ "Record", "Prey", "PercentOccurrence", "PercentNumber", "PercentWeight" ], "rows": 9, "table": true, "tojson": true }, { "name": "CortesPreyVals", "title": "CortesPreyVals", "object": "CortesPreyVals", "class": [ "data.frame" ], "fields": [ "FoodI", "FoodII", "FoodII.1", "Stage", "TL", "SE" ], "rows": 10, "table": true, "tojson": true }, { "name": "FishBasePreyVals", "title": "FishBasePreyVals", "object": "FishBasePreyVals", "class": [ "data.frame" ], "fields": [ "FoodI", "FoodII", "FoodIII", "Stage", "TL", "SE" ], "rows": 384, "table": true, "tojson": true }, { "name": "Herichthys", "title": "Herichthys", "object": "Herichthys", "class": [ "data.frame" ], "fields": [ "individual", "lake", "year", "mtDNA", "bodyPC1", "bodyPC2", "bodyPC3", "bodyPC4", "jawPC1", "jawPC2", "unh012", "X", "m1m", "X.1", "aburt28", "X.2", "burtkit", "X.3", "M002", "X.4", "M007", "X.5", "unh013", "X.6", "aburt151", "X.7", "M30", "X.8", "Tmom7", "X.9", "X.Gastrop", "X.Insect", "X.Fish", "X.Zoopl", "X.plants", "X.algae", "X.detritus", "X.Digested", "X.Other", "total" ], "rows": 519, "table": true, "tojson": true }, { "name": "Horn1982", "title": "Horn1982", "object": "Horn1982", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "SebastesStomachs", "title": "SebastesStomachs", "object": "SebastesStomachs", "class": [ "data.frame" ], "fields": [ "Specimen", "StomachWeight", "PredatorWeight" ], "rows": 11, "table": true, "tojson": true } ], "_help": [ { "page": "Casaux1998", "title": "Casaux1998", "topics": [ "Casaux1998" ] }, { "page": "CompositeIndices", "title": "Calculates various composite indices for studying trophic ecology", "topics": [ "CompositeIndices" ] }, { "page": "ConvertFishbaseDiet", "title": "Converts FishBase/SealifBase diet data obtained from rfishbase for use with dietr", "topics": [ "ConvertFishbaseDiet" ] }, { "page": "ConvertFishbaseFood", "title": "Converts FishBase/SealifBase food item diet data obtained from the diet function into a usable format for dietr", "topics": [ "ConvertFishbaseFood" ] }, { "page": "CortesPreyVals", "title": "CortesPreyVals", "topics": [ "CortesPreyVals" ] }, { "page": "dietr", "title": "Diet Estimated Trophic Levels in R", "topics": [ "dietr" ] }, { "page": "DietTroph", "title": "Calculates trophic level from percentage based quantitative diet data (volumetric, weight, etc.) for species, populations, and individuals.", "topics": [ "DietTroph" ] }, { "page": "Electivity", "title": "Calculates a variety of electivity indices and foraging ratios", "topics": [ "Electivity" ] }, { "page": "FishBasePreyVals", "title": "FishBasePreyVals", "topics": [ "FishBasePreyVals" ] }, { "page": "FoodTroph", "title": "Calculates trophic level from qualitative food item data for species, populations, and individuals using a random subsampling routine.", "topics": [ "FoodTroph" ] }, { "page": "GastrosomaticIndex", "title": "Calculates Gastro-somatic Index (AKA Fullness Index, Index of fullness)", "topics": [ "GastrosomaticIndex" ] }, { "page": "Herichthys", "title": "Herichthys", "topics": [ "Herichthys" ] }, { "page": "Horn1982", "title": "Horn1982", "topics": [ "Horn1982" ] }, { "page": "PlotElectivity", "title": "Creates Electivity plots", "topics": [ "PlotElectivity" ] }, { "page": "SebastesStomachs", "title": "SebastesStomachs", "topics": [ "SebastesStomachs" ] }, { "page": "VacuityIndex", "title": "Calculates the vacuity index, the proportion of fish which contain food in their stomach.", "topics": [ "VacuityIndex" ] } ], "_readme": "https://github.com/sborstein/dietr/raw/HEAD/README.md", "_rundeps": [ "blob", "cachem", "cli", "cpp11", "DBI", "dbplyr", "dplyr", "duckdb", "duckdbfs", "fastmap", "fs", "generics", "glue", "lifecycle", "magrittr", "memoise", "pillar", "pkgconfig", "purrr", "R6", "rfishbase", "rlang", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "xml2" ], "_vignettes": [ { "source": "dietr-vignette.Rmd", "filename": "dietr-vignette.html", "title": "dietr Tutorial", "author": "Samuel R. Borstein", "engine": "knitr::rmarkdown", "headings": [ "1: Introduction", "2: Installation", "2.1: Installation From CRAN", "2.2: Installation of Development Version From GitHub", "3: Using dietr", "3.0: Basic Data Necessary to Run dietr for Trophic level Calculations", "3.1: Using dietr to Calculate Trophic Levels From FishBase Diet Data", "3.2: Using dietr to Calculate Trophic Levels from FishBase Food Item Data", "3.3: Using dietr to Calculate Trophic Levels From Your Own Data", "3.4: Using dietr to Calculate Electivity Indices", "3.5: Using dietr to Calculate Composite Diet Indices", "3.5: Using dietr to Calculate the Gastro-somatic Index and Vacuity Index", "4: Final Comments", "5: References" ], "created": "2018-07-09 21:33:53", "modified": "2024-09-16 00:03:28", "commits": 14 } ], "_score": 4.838849090737256, "_indexed": false, "_nocasepkg": "dietr", "_universes": [ "phylotastic" ], "_indexurl": "https://sborstein.r-universe.dev/dietr", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.6-1", "date": "2026-05-15T07:56:51.000Z", "distro": "noble", "commit": "cd521d8d6e25caa1ba1a3baf90e0b9c35ea0b3d2", "fileid": "91a11268806b542bb944ec67bfabd1b6c734f94c6104a5c30cd560baa5e4bb41", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/25906885572" }, { "r": "4.6.0", "os": "linux", "version": "1.1.6-1", "date": "2026-05-15T07:56:42.000Z", "distro": "noble", "commit": "cd521d8d6e25caa1ba1a3baf90e0b9c35ea0b3d2", "fileid": "320822eeb2f744f038ab1b31181d73414919eb16e420cfc0fb6ebbb048178820", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/25906885572" }, { "r": "4.5.3", "os": "mac", "version": "1.1.6-1", "date": "2026-05-15T07:55:56.000Z", "commit": "cd521d8d6e25caa1ba1a3baf90e0b9c35ea0b3d2", "fileid": "cec3c7e9acc9ba80ab6fac0c8483e66d386285f5d002e8235f9fcf34128e885c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/25906885572" }, { "r": "4.6.0", "os": "mac", "version": "1.1.6-1", "date": "2026-05-15T07:56:14.000Z", "commit": "cd521d8d6e25caa1ba1a3baf90e0b9c35ea0b3d2", "fileid": "15907034cf4d1b05ea076794558e174a54dc3d9b5baaf4e5e8a3aea14e4611df", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/25906885572" }, { "r": "4.7.0", "os": "win", "version": "1.1.6-1", "date": "2026-05-15T07:55:56.000Z", "commit": "cd521d8d6e25caa1ba1a3baf90e0b9c35ea0b3d2", "fileid": "59748fe08f142844774732bfacac9f9284829b2ec7d36e8d662698a1254090eb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/25906885572" }, { "r": "4.5.3", "os": "win", "version": "1.1.6-1", "date": "2026-05-15T07:55:39.000Z", "commit": "cd521d8d6e25caa1ba1a3baf90e0b9c35ea0b3d2", "fileid": "56ef7b50ed900ed1bf5a4245f0f09b890a87a63f44c98b5828caa40798cf5550", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/25906885572" }, { "r": "4.6.0", "os": "win", "version": "1.1.6-1", "date": "2026-05-15T07:55:43.000Z", "commit": "cd521d8d6e25caa1ba1a3baf90e0b9c35ea0b3d2", "fileid": "3b02305c74ab7d72ccbcd17c476355d7187846e820f6fd44fbd4561624a5a553", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/25906885572" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.6-1", "date": "2026-06-02T19:09:50.000Z", "commit": "cd521d8d6e25caa1ba1a3baf90e0b9c35ea0b3d2", "fileid": "17af450620b40e8edbf637bbb0b2f31bb4f6806119d39bb220aabcbf311fded8", "status": "success", "buildurl": "https://github.com/r-universe/phylotastic/actions/runs/25906885572" } ] }