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  "Version": "1.3.0",
  "Title": "Interface to Bold Systems API",
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  "Description": "A programmatic interface to the Web Service methods\nprovided by Bold Systems (<http://www.boldsystems.org/>) for\ngenetic 'barcode' data. Functions include methods for searching\nby sequences by taxonomic names, ids, collectors, and\ninstitutions; as well as a function for searching for\nspecimens, and downloading trace files.",
  "License": "MIT + file LICENSE",
  "URL": "https://docs.ropensci.org/bold/ (documentation),\nhttps://github.com/ropensci/bold (source)",
  "BugReports": "https://github.com/ropensci/bold/issues",
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  "Encoding": "UTF-8",
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  "Repository": "https://phylotastic.r-universe.dev",
  "Date/Publication": "2024-12-13 22:53:13 UTC",
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  "Author": "Salix Dubois [aut, cre],\nScott Chamberlain [aut] (ORCID:\n<https://orcid.org/0000-0003-1444-9135>)",
  "Maintainer": "Salix Dubois <salixdubois+bold@gmail.com>",
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    "barcode",
    "dna",
    "sequences",
    "fasta",
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    "barcodes",
    "taxize"
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    },
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      "date": "2014-07-24"
    },
    {
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      "date": "2014-08-20"
    },
    {
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      "date": "2015-04-18"
    },
    {
      "version": "0.3.0",
      "date": "2015-09-16"
    },
    {
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      "date": "2016-03-23"
    },
    {
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      "date": "2016-03-29"
    },
    {
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      "date": "2017-01-06"
    },
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      "date": "2017-07-21"
    },
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    },
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      "date": "2018-12-14"
    },
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      "date": "2019-06-27"
    },
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    },
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    },
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    "bold_get_errors",
    "bold_get_params",
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    "bold_identify_parents",
    "bold_identify_taxonomy",
    "bold_read_trace",
    "bold_seq",
    "bold_seqspec",
    "bold_specimens",
    "bold_stats",
    "bold_tax_id",
    "bold_tax_id2",
    "bold_tax_name",
    "bold_trace",
    "read_trace"
  ],
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    {
      "name": "sequences",
      "title": "List of 3 nucleotide sequences to use in examples for the 'bold_identify' function",
      "object": "sequences",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    }
  ],
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      "page": "bold-package",
      "title": "bold",
      "topics": [
        "bold-package",
        "bold"
      ]
    },
    {
      "page": "b_sepFasta",
      "title": "Separate sequences (fasta) from 'bold_seqspec' output.",
      "topics": [
        "b_sepFasta"
      ]
    },
    {
      "page": "bold_filter",
      "title": "Filter BOLD specimen + sequence data (output of bold_seqspec)",
      "topics": [
        "bold_filter"
      ]
    },
    {
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      "topics": [
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        "bold_get_errors",
        "bold_get_params"
      ]
    },
    {
      "page": "bold_identify",
      "title": "Search for matches to sequences against the BOLD COI database.",
      "topics": [
        "bold_identify"
      ]
    },
    {
      "page": "bold_identify_taxonomy",
      "title": "Add taxonomic parent names to a data set containing the process IDs of identified sequences.",
      "topics": [
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        "bold_identify_taxonomy,data.frame-method",
        "bold_identify_taxonomy,list-method",
        "bold_identify_taxonomy,matrix-method",
        "bold_identify_taxonomy,missing-method"
      ]
    },
    {
      "page": "bold_seq",
      "title": "Search BOLD for sequences.",
      "topics": [
        "bold_seq"
      ]
    },
    {
      "page": "bold_seqspec",
      "title": "Get BOLD specimen + sequence data.",
      "topics": [
        "bold_seqspec"
      ]
    },
    {
      "page": "bold_specimens",
      "title": "Search BOLD for specimens.",
      "topics": [
        "bold_specimens"
      ]
    },
    {
      "page": "bold_stats",
      "title": "Get BOLD stats",
      "topics": [
        "bold_stats"
      ]
    },
    {
      "page": "bold_tax_id2",
      "title": "Search BOLD for taxonomy data by BOLD ID.",
      "topics": [
        "bold_tax_id2"
      ]
    },
    {
      "page": "bold_tax_name",
      "title": "Search BOLD for taxonomy data by taxonomic name",
      "topics": [
        "bold_tax_name"
      ]
    },
    {
      "page": "bold_trace",
      "title": "Get BOLD trace files",
      "topics": [
        "bold_read_trace",
        "bold_trace",
        "print.boldtrace",
        "read_trace"
      ]
    },
    {
      "page": "sequences",
      "title": "List of 3 nucleotide sequences to use in examples for the 'bold_identify' function",
      "topics": [
        "sequences"
      ]
    }
  ],
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