{ "_id": "6a424d834ba05a737d8a3c17", "Package": "Rogue", "Title": "Identify Rogue Taxa in Sets of Phylogenetic Trees", "Version": "2.2.1.9000", "Authors@R": "c(\nperson(\"Martin R.\", 'Smith',\nemail = \"martin.smith@durham.ac.uk\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-5660-1727\")),\nperson(given = \"Andre J.\", family=\"Aberer\",\nrole = c(\"aut\", \"cph\"),\nemail = \"andre.aberer@googlemail.com\",\ncomment = \"RogueNaRok\"\n)\n)", "License": "GPL (>= 3)", "Description": "Rogue (\"wildcard\") taxa are leaves with uncertain\nphylogenetic position. Their position may vary from tree to\ntree under inference methods that yield a tree set (e.g.\nbootstrapping, Bayesian tree searches, maximum parsimony). The\npresence of rogue taxa in a tree set can potentially remove all\ninformation from a consensus tree. The information content of a\nconsensus tree - a function of its resolution and branch\nsupport values - can often be increased by removing rogue tips.\n'Rogue' provides an explicitly information-theoretic approach\nto rogue detection (Smith 2022) ,\nan interface to 'RogueNaRok' (Aberer et al. 2013)\n, and heuristics for measuring leaf\ninstability.", "URL": "https://ms609.github.io/Rogue/", "BugReports": "https://github.com/ms609/Rogue/issues/", "Config/Needs/github-actions": "callr, pkgbuild, rcmdcheck,", "Config/Needs/coverage": "covr", "Config/Needs/memcheck": "devtools", "Config/Needs/metadata": "codemetar", "Config/Needs/website": "pkgdown", "Config/roxygen2/version": "8.0.0", "RdMacros": "Rdpack", "SystemRequirements": "C++17", "ByteCompile": "true", "Encoding": "UTF-8", "Language": "en-GB", "VignetteBuilder": "knitr", "Roxygen": "list(markdown = TRUE)", "Config/pak/sysreqs": "cmake make libuv1-dev zlib1g-dev", "Repository": "https://phylotastic.r-universe.dev", "Date/Publication": "2026-06-29 08:52:46 UTC", "RemoteUrl": "https://github.com/ms609/Rogue", "RemoteRef": "HEAD", "RemoteSha": "573cf9b63ffd0fb9be61f898e9073eef6ac0c200", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-29 10:44:10 UTC", "User": "root" }, "Author": "Martin R. 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