{ "_id": "6a1f55e8b401979e7342b785", "Package": "Rogue", "Title": "Identify Rogue Taxa in Sets of Phylogenetic Trees", "Version": "2.2.0", "Authors@R": "c(\nperson(\"Martin R.\", 'Smith',\nemail = \"martin.smith@durham.ac.uk\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-5660-1727\")),\nperson(given = \"Andre J.\", family=\"Aberer\",\nrole = c(\"aut\", \"cph\"),\nemail = \"andre.aberer@googlemail.com\",\ncomment = \"RogueNaRok\"\n)\n)", "License": "GPL (>= 3)", "Description": "Rogue (\"wildcard\") taxa are leaves with uncertain\nphylogenetic position. Their position may vary from tree to\ntree under inference methods that yield a tree set (e.g.\nbootstrapping, Bayesian tree searches, maximum parsimony). The\npresence of rogue taxa in a tree set can potentially remove all\ninformation from a consensus tree. The information content of a\nconsensus tree - a function of its resolution and branch\nsupport values - can often be increased by removing rogue taxa.\n'Rogue' provides an explicitly information-theoretic approach\nto rogue detection (Smith 2022) ,\nand an interface to 'RogueNaRok' (Aberer et al. 2013)\n.", "URL": "https://github.com/ms609/Rogue/,\nhttps://github.com/aberer/RogueNaRok/,\nhttps://github.com/ms609/RogueNaRok/", "BugReports": "https://github.com/ms609/Rogue/issues/", "Config/Needs/github-actions": "callr, pkgbuild, rcmdcheck,", "Config/Needs/coverage": "covr", "Config/Needs/memcheck": "devtools", "Config/Needs/metadata": "codemetar", "Config/Needs/website": "pkgdown", "RdMacros": "Rdpack", "SystemRequirements": "C99", "ByteCompile": "true", "Encoding": "UTF-8", "Language": "en-GB", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.3", "Roxygen": "list(markdown = TRUE)", "Config/pak/sysreqs": "cmake make libuv1-dev zlib1g-dev", "Repository": "https://phylotastic.r-universe.dev", "Date/Publication": "2026-03-30 09:46:52 UTC", "RemoteUrl": "https://github.com/ms609/Rogue", "RemoteRef": "HEAD", "RemoteSha": "f84f09843a55d0429fec8464f07bb27a1eb5e004", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-02 22:09:09 UTC", "User": "root" }, "Author": "Martin R. 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