Package: MonoPhy
Type: Package
Title: Explore Monophyly of Taxonomic Groups in a Phylogeny
Version: 1.3.2
Date: 2024-10-16
Authors@R: c(person("Orlando", "Schwery", role=c("aut", "cre"), email="schwery.macroevo@pm.me"),
             person("Brian C.", "O'Meara", role=c("aut", "ctb")),
             person("Peter", "Cowman", role=c("ctb")))
Description: Requires rooted phylogeny as input and creates a table of
        genera, their monophyly-status, which taxa cause problems in
        monophyly etc. Different information can be extracted from the
        output and a plot function allows visualization of the results
        in a number of ways. "MonoPhy: a simple R package to find and
        visualize monophyly issues." Schwery, O. & O'Meara, B.C. (2016)
        <doi:10.7717/peerj-cs.56>.
Depends: ape, phytools
Imports: phangorn, RColorBrewer
License: GPL-3
Suggests: knitr, testthat, paleotree, rmarkdown, taxize
VignetteBuilder: knitr
Config/pak/sysreqs: libglpk-dev make libxml2-dev
Repository: https://phylotastic.r-universe.dev
Date/Publication: 2024-10-16 23:33:23 UTC
RemoteUrl: https://github.com/oschwery/MonoPhy
RemoteRef: HEAD
RemoteSha: ccd56b251233faef1fb53c1a2b969757f12c17d4
NeedsCompilation: no
Packaged: 2026-07-09 21:24:20 UTC; root
Author: Orlando Schwery [aut, cre],
  Brian C. O'Meara [aut, ctb],
  Peter Cowman [ctb]
Maintainer: Orlando Schwery <schwery.macroevo@pm.me>